miRBase entry: cel-mir-2219

Stem-loop cel-mir-2219


Accession
MI0010972
Description
Caenorhabditis elegans cel-mir-2219 precursor miRNA


Sequence

106 reads, 8 reads per million, 12 experiments
ACAGCUUUCUCUCGCACAUCGUCagcuagauuugaacucuguaugaaagCUGACGAAGUGCGAGGGAAAGCugaag
.((((((((((((((((.(((((((((....................))))))))).))))))))))))))))...

Structure
--A                A         agauuugaa 
   CAGCUUUCUCUCGCAC UCGUCagcu         c
   |||||||||||||||| |||||||||          
   guCGAAAGGGAGCGUG AGCAGUCga         u
gaa                A         aaguauguc 


Annotation confidence Not enough data
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Genome context
chrV: 2924580-2924655 [-]

Database links

Mature cel-miR-2219-5p

Accession MIMAT0011459
Description Caenorhabditis elegans cel-miR-2219-5p mature miRNA
Sequence 1 - ACAGCUUUCUCUCGCACAUCGUC - 23
Evidence experimental
Illumina [1-2]
Database links

Mature cel-miR-2219-3p

Accession MIMAT0011460
Description Caenorhabditis elegans cel-miR-2219-3p mature miRNA
Sequence 50 - CUGACGAAGUGCGAGGGAAAGC - 71
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  2. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577