miRBase entry: ppc-mir-84b

Stem-loop ppc-mir-84b


Accession
MI0011144
Description
Pristionchus pacificus ppc-mir-84b precursor miRNA
Gene family
MIPF0000250; mir-84

Literature search
1 open access papers mention ppc-mir-84b
(1 sentences)

Sequence

ucccuuccaaucgauaccacaguUGAGGUAGUUAAGAAUAUGUGaugccuuucgggaaucauucacuuauucuuccugccucaccugugacgauggaaucgga
(((.(((((.(((....(((((.((((((((..(((((((.(((((((((...)))...)).)))).))))))).)))))))).))))).))))))))..)))

Structure
   -c     a   auac     u        UU       U    -  ---   u 
ucc  uucca ucg    cacag UGAGGUAG  AAGAAUA GUGa ug   ccu  
|||  ||||| |||    ||||| ||||||||  ||||||| |||| ||   ||| u
agg  aaggu agc    guguc acuccguc  uucuuau cacu ac   ggg  
   cu     -   ---a     c        -c       u    u  uaa   c 


Annotation confidence Not enough data
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Genome context
ABKE03000008.1: 1931523-1931625 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-84b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-84b

Accession MIMAT0011653
Description Pristionchus pacificus ppc-miR-84b mature miRNA
Sequence 24 - UGAGGUAGUUAAGAAUAUGUG - 44
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074