miRBase entry: ppc-mir-71a

Stem-loop ppc-mir-71a


Accession
MI0011151
Description
Pristionchus pacificus ppc-mir-71a precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
2 open access papers mention ppc-mir-71a
(18 sentences)

Sequence

gucgugucgacgaccgacgagcgaaggUGAAAGACCUGUUGGUAGUGAGACGaugaaauuuaauccuuucguaucacuacccaggcuuucgcccuugcuucgguacaauggcc
((((...)))).(((((..(((((.((((((((.((((..((((((((.((((...............)))).)))))))))))))))))))).)))))))))).........

Structure
gucgugucgacg     cg     a        A    UU        G    ugaaau 
            accga  agcga ggUGAAAG CCUG  GGUAGUGA ACGa      u
            |||||  ||||| |||||||| ||||  |||||||| ||||      u
            uggcu  ucguu ccgcuuuc ggac  ccaucacu ugcu      a
---ccgguaaca     --     c        -    --        a    uuccua 


Annotation confidence Not enough data
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Genome context
ABKE03000107.1: 286429-286541 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-71a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-71a

Accession MIMAT0011659
Description Pristionchus pacificus ppc-miR-71a mature miRNA
Sequence 28 - UGAAAGACCUGUUGGUAGUGAGACG - 52
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074