Accession
MI0011181
Description
Pristionchus pacificus
ppc-mir-2235a-8 precursor miRNA
Gene family
MIPF0000825;
mir-2235
Sequence
guccgcucuugcccgcUCAUUCAAUAUUGCCGGUUUGAACgaaauugaucaguUCACCGGGAGCAUUGUAUGAUCgggcuucggacc
(((((.....(((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).)))))..))))).
(((((.....(((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).)))))..))))).
Structure
- cucuu c U A G UU - aa guccg gcccg UCAU CAAU UU CCGGU GAAC ga u ||||| ||||| |||| |||| || ||||| |||| || caggc cgggC AGUA GUUA GA GGCCA CUug cu u c ---uu U U C G -- a ag
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
ABKE03000123.1: 4492321-4492407 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from ppc-mir-2235a-8
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2235a-3p
| Accession | MIMAT0011681 |
| Description | Pristionchus pacificus ppc-miR-2235a-3p mature miRNA |
| Sequence | 54 - UCACCGGGAGCAUUGUAUGAUC - 75 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2235a-5p
| Accession | MIMAT0032107 |
| Description | Pristionchus pacificus ppc-miR-2235a-5p mature miRNA |
| Sequence | 17 - UCAUUCAAUAUUGCCGGUUUGAAC - 40 |
| Evidence |
experimental
SOLiD [1] |
References
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