miRBase entry: osa-MIR2275a

Stem-loop osa-MIR2275a


Accession
MI0011269
Description
Oryza sativa osa-MIR2275a precursor miRNA
Gene family
MIPF0000797; MIR2275

Literature search
14 open access papers mention osa-MIR2275a
(75 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments
agcuuagcuaggcaucacaaaccauaaucuuuggcaguugaauuugagguuuggaugggaccaaaucuuacugcagacuugcagauuaacgcaagaUUUGGUUUCCUCCAAUAUCUCAuguucaguugucagacagugaauaauggugcaauuagugagcu
((((((.((((((((((.....(((....((((((((((((((.(((((((((((.(((((((((((((.(((((....)))))........))))))))))))).))))).)))))).))))))))))))))..))).....))))))..))))))))))

Structure
      g    --      caaac   aauc              u      -     u             -------a     g 
agcuua cuag  gcauca     cau    uuuggcaguugaau ugaggu uugga gggaccaaaucuu        cugca a
|||||| ||||  ||||||     |||    |||||||||||||| |||||| ||||| |||||||||||||        |||||  
ucgagu gauu  cguggu     gug    agacuguugacuug ACUCUA AACCU CUUUGGUUUagaa        gacgu c
      -    aa      aauaa   --ac              u      U     C             cgcaauua     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr8: 1204975-1205135 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR2275a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2275a

Accession MIMAT0011758
Description Oryza sativa osa-miR2275a mature miRNA
Sequence 97 - UUUGGUUUCCUCCAAUAUCUCA - 118
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440