Stem-loop sequence zma-MIR2118a

Accession

MI0011271 (change log)

Description

Zea mays miR2118a stem-loop

Gene family

MIPF0000745; MIR2118

Literature search

11 open access papers mention zma-MIR2118a
(13 sentences)

Stem-loop

            a            -a   ga          --    u ugaa    u   c 
5' ccuaagggc guagggaugaga  cau  aggaacgcga  gugc c    uuuc cgu u
   ||||||||| ||||||||||||  |||  ||||||||||  |||| |    |||| ||| c
3' ggauucuug uauccuuacucu  gua  uccuugugcu  cacg g    ggag gca g
            g            cc   -g          gu    u uaca    -   c 

Deep sequencing

852 reads, 801 reads per million, 153 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr10: 118790595-118790712 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011271

Mature sequence zma-miR2118a

• Accession: MIMAT0011760
• Sequence: 86 - uuccugaugccucucauuccua - 107
• Deep sequencing: 8 reads, 4 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).