miRBase entry: zma-MIR2118c

Stem-loop zma-MIR2118c


Accession
MI0011273
Description
Zea mays zma-MIR2118c precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
11 open access papers mention zma-MIR2118c
(13 sentences)

Sequence

7 reads, 37 reads per million, 2 experiments
ggaagaggaaguaaagaugaucuaagagcagugggcaugggaacauggaggaaggccuaugagguugaaaccucauuuugugucUUCCUAAUGCCUCCCAUUCCUAucguucuuaggugauccuuccucuugc
(.(((((((((....(((.((((((((((.(((((.((((((.(((..(((((((((.(((((((....)))))))...).)))))))).)))..)))))).))))).)))))))))).)))))))))))).)

Structure
 g         uaaa   g          a     c      -a   gg        - --u       u 
g aagaggaag    gau aucuaagagc guggg auggga  cau  aggaaggc c   augaggu g
| |||||||||    ||| |||||||||| ||||| ||||||  |||  |||||||| |   |||||||  
c uucuccuuc    cua uggauucuug uAUCC UACCCU  GUA  UCCUUcug g   uacucca a
 g         ----   g          c     U      CC   -A        u uuu       a 


Annotation confidence Not enough data
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Genome context
chr10: 118813614-118813746 [-]

Database links

Mature zma-miR2118c

Accession MIMAT0011762
Description Zea mays zma-miR2118c mature miRNA
Sequence 85 - UUCCUAAUGCCUCCCAUUCCUA - 106
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440