Stem-loop zma-MIR2118d

Accession

MI0011274

Description

Zea mays zma-MIR2118d precursor miRNA

Gene family

MIPF0000745; MIR2118

Literature search

12 open access papers mention zma-MIR2118d
(14 sentences)

Sequence

5 reads, 44 reads per million, 2 experiments

gugagcauggaagaggaagagagggucuaagagcagugggcaugggaacacggaggaaggccuaugaguggaaagcucauuuugggucUUCCUGAUGCCUCCCAUGCCUAucguuguuaggugcuccuuccucuugcuuuuggcucac
((((((..(.(((((((((.(((.((((((.(((.((((((((((((......((((((((((((((((.....))))))...))))))))))......)))))))))))).))).)))))).)))))))))))).).....))))))

Structure

      ---au g         a   g      g   a            acacgg          ---      g 
gugagc     g aagaggaag gag gucuaa agc gugggcauggga      aggaaggccu   augagu g
||||||     | ||||||||| ||| |||||| ||| ||||||||||||      ||||||||||   |||||| a
cacucg     c uucuccuuc cuc uggauu uug uAUCCGUACCCU      UCCUUcuggg   uacucg a
      guuuu g         -   g      g   c            CCGUAG          uuu      a 

Annotation confidence Not enough data

Genome context

chr2: 51343097-51343244 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR2118d

Mature zma-miR2118d

• Accession: MIMAT0011763
• Description: Zea mays zma-miR2118d mature miRNA
• Sequence: 89 - UUCCUGAUGCCUCCCAUGCCUA - 110
• Evidence: not_experimental

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440