Stem-loop sequence zma-MIR2118f

Accession

MI0011276 (change log)

Description

Zea mays miR2118f stem-loop

Gene family

MIPF0000745; MIR2118

Literature search

11 open access papers mention zma-MIR2118f
(13 sentences)

Stem-loop

                       -a   a      a  c     ---------          guac 
5' uaagagcagugggcauggga  cau ggggaa gc aaacu         uucuuuaccu    a
   ||||||||||||||||||||  ||| |||||| || |||||         ||||||||||     
3' auucuuguuauccguaccuu  gua cccuuu ug uuuga         aagagguggg    a
                       cc   a      g  a     uuagagguc          aauc 

Deep sequencing

405 reads, 438 reads per million, 135 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr10: 118740280-118740399 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR2118f

• zma-MIR2118e: chr10: 118740501-118740643 [-]
• zma-MIR2118f: chr10: 118740280-118740399 [-]

Database links

• miRBase Tracker:MI0011276

Mature sequence zma-miR2118f

• Accession: MIMAT0011765
• Sequence: 90 - uucccaaugccuuccaugccua - 111
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).