Stem-loop zma-MIR2118g

Accession

MI0011277

Description

Zea mays zma-MIR2118g precursor miRNA

Literature search

11 open access papers mention zma-MIR2118g
(13 sentences)

Sequence

9 reads, 43 reads per million, 2 experiments

gccaggaaaaggaugaaagauucuaagagcacuaggaauaggaacaugaaggaaagcauuauugugcauggagauuuaggccugauguuUUCCUGAUGCCUCCUAUUCCUAaggcucuuagguucuccuucccuuuccuuauggc
(((((((((.(((....(((.(((((((((..(((((((((((.(((..((((((((((((..(.((.(((....))).))))))))))))))).)))..)))))))))))..))))))))).)))...))).)))))...))))

Structure

    ---     a   ugaa   u         ac           -a   ga            uu u  a   a 
gcca   ggaaa gga    aga ucuaagagc  uaggaauagga  cau  aggaaagcauua  g gc ugg g
||||   ||||| |||    ||| |||||||||  |||||||||||  |||  ||||||||||||  | || |||  
cggu   ccuuu ccu    ucu ggauucucg  AUCCUUAUCCU  GUA  UCCUUuuguagu  c cg auu a
    auu     c   -ucc   u         ga           CC   -G            -- -  g   u 

Annotation confidence Low

Genome context

chr2: 51409047-51409191 [+]

Mature zma-miR2118g

• Accession: MIMAT0011766
• Description: Zea mays zma-miR2118g mature miRNA
• Sequence: 90 - UUCCUGAUGCCUCCUAUUCCUA - 111
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440