miRBase entry: zma-MIR2275d

Stem-loop zma-MIR2275d


Accession
MI0011281
Description
Zea mays zma-MIR2275d precursor miRNA
Gene family
MIPF0000797; MIR2275

Literature search
10 open access papers mention zma-MIR2275d
(16 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
gucaggcacuaaaagugAGAGUUGGAGGAAAGAAAACUaaucggcuaucagauucugcaauggcuugaugcauaaacaugauugccguuccgUUUGUUUUCCUCUAAUAUCUCAccuuca
..............((((((((((((((((((.((((....((((.((((.....((((.........))))......)))).))))....)))).)))))))))))).)))))).....

Structure
gucaggcacuaaaa      -            A    Uaau    u    -gauuc    aug 
              gugAGA GUUGGAGGAAAG AAAC    cggc auca      ugca   g
              |||||| |||||||||||| ||||    |||| ||||      ||||   c
              cACUCU UAAUCUCCUUUU UUUg    gccg uagu      acgu   u
---------acuuc      A            G    ccuu    u    acaaau    agu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 207980073-207980192 [+]

Database links

Mature zma-miR2275d-5p

Accession MIMAT0011773
Description Zea mays zma-miR2275d-5p mature miRNA
Sequence 18 - AGAGUUGGAGGAAAGAAAACU - 38
Evidence not_experimental

Mature zma-miR2275d-3p

Accession MIMAT0011774
Description Zea mays zma-miR2275d-3p mature miRNA
Sequence 93 - UUUGUUUUCCUCUAAUAUCUCA - 114
Evidence not_experimental

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440