Stem-loop sequence dme-mir-2279

Accession

MI0011289 (change log)

Description

Drosophila melanogaster miR-2279 stem-loop

Literature search

1 open access papers mention dme-mir-2279
(1 sentences)

Stem-loop

   -   gagagg      aaa     -uu     u         g            u  a 
5'  cgg      auuaug   gacaa   ugaaa uaaauaucu ugugugaaauua uu a
    |||      ||||||   |||||   ||||| ||||||||| |||||||||||| ||  
3'  gcc      uaauau   cuguu   auuuu auuuauaga gcgcacuuuaau ag a
   g   ----aa      -cc     uac     u         a            u  a 

Deep sequencing

419 reads, 2.17 reads per million, 46 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 2552170-2552282 [-]
• Overlapping transcripts:

  sense

  FBtr0301779 ; MFS17-RF; intron 2

  FBtr0301780 ; MFS17-RG; intron 3

  FBtr0301781 ; MFS17-RH; intron 3

Database links

• miRBase Tracker:MI0011289

Mature sequence dme-miR-2279-5p

• Accession: MIMAT0011784
• Previous IDs: dme-miR-2279*
• Sequence: 31 - uuaaauaucugugugugaaauu - 52
• Deep sequencing: 345 reads, 44 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS00005C5CDB_7227
• Predicted targets:
  • microrna.org:dme-miR-2279-5p

Mature sequence dme-miR-2279-3p

• Accession: MIMAT0011785
• Previous IDs: dme-miR-2279
• Sequence: 67 - uuucacgcgaagauauuuauuu - 88
• Deep sequencing: 49 reads, 13 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS000004599E_7227
• Predicted targets:
  • microrna.org:dme-miR-2279-3p

References

1. PMID:19541914 "Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line" Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC Genome Res. 19:1776-1785(2009).
2. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).