miRBase entry: dme-mir-2279

Stem-loop dme-mir-2279


Accession
MI0011289
Description
Drosophila melanogaster dme-mir-2279 precursor miRNA

Literature search
1 open access papers mention dme-mir-2279
(1 sentences)

Sequence

354 reads, 36 reads per million, 44 experiments
cgggagaggauuaugaaagacaauuugaaaUUAAAUAUCUGUGUGUGAAAUUauuuaaaagauuaaUUUCACGCGAAGAUAUUUAUUUuuacauuugucccuauaauaaccgg
(((......((((((...(((((..(((((.(((((((((.((((((((((((.((....)).)))))))))))).))))))))).)))))...)))))..))))))..))).

Structure
-   gagagg      aaa     -uu     U         G            u  a 
 cgg      auuaug   gacaa   ugaaa UAAAUAUCU UGUGUGAAAUUa uu a
 |||      ||||||   |||||   ||||| ||||||||| |||||||||||| ||  
 gcc      uaauau   cuguu   auuUU AUUUAUAGA GCGCACUUUaau ag a
g   ----aa      -cc     uac     U         A            u  a 


Annotation confidence High
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Genome context
chr2R: 2552170-2552282 [-]

Database links

Mature dme-miR-2279-5p

Accession MIMAT0011784
Description Drosophila melanogaster dme-miR-2279-5p mature miRNA
Sequence 31 - UUAAAUAUCUGUGUGUGAAAUU - 52
Evidence experimental
454 [1], Illumina [2]
Database links

Mature dme-miR-2279-3p

Accession MIMAT0011785
Description Drosophila melanogaster dme-miR-2279-3p mature miRNA
Sequence 67 - UUUCACGCGAAGAUAUUUAUUU - 88
Evidence experimental
454 [1], Illumina [2]
Database links

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9

  2. PubMed ID: 19541914
    Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line
    "Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC"
    "Genome Res (2009) 19:1776-1785