Stem-loop bdi-MIR169b

Accession

MI0011574

Description

Brachypodium distachyon bdi-MIR169b precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

3 open access papers mention bdi-MIR169b
(27 sentences)

Sequence

gagauagagaguggaaugUAGCCAAGGAUGACUUGCCGGguaugugcauguacgcuucagggaauuauaugcaucccuggucugaauccaugcugauauuucccgg
............((((((((((...((((..(..((((((...(((((((((...(((...))).))))))))).))))))..).))))..))).)))))))....

Structure

gagauagagagu       -   CAA    GA UU      uau         cgc   a 
            ggaaugU AGC   GGAU  C  GCCGGg   gugcaugua   uuc  
            ||||||| |||   ||||  |  ||||||   |||||||||   ||| g
            cuuuaua ucg   ccua  g  uggucc   uacguauau   aag  
--------ggcc       g   -ua    -a uc      --c         --u   g 

Annotation confidence Not enough data

Genome context

1: 27159120-27159225 [-]

Mature bdi-miR169b

• Accession: MIMAT0012189
• Description: Brachypodium distachyon bdi-miR169b mature miRNA
• Sequence: 19 - UAGCCAAGGAUGACUUGCCGG - 39
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669


2. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443