miRBase entry: dps-mir-1002

Stem-loop dps-mir-1002


Accession
MI0011606
Description
Drosophila pseudoobscura dps-mir-1002 precursor miRNA
Gene family
MIPF0000909; mir-1002


Sequence

ggcagguccucucaaaauaaucgggcacCUAAGUAGUUGAUACAAGGGCGAuaauguaaaagaacuuucGCAUUGUGUGACCUACUUAAAUgcucgauuguuucaagcaaccucua
((.((((...((..(((((((((((((..(((((((.(.((((((..((((....((......))..)))).)))))).).)))))))..)))))))))))))..))..)))))).

Structure
-  c    ccu  ca             cC       U G      GG    uaau  aa 
 gg aggu   cu  aaauaaucgggca  UAAGUAG U AUACAA  GCGA    gu  a
 || ||||   ||  |||||||||||||  ||||||| | ||||||  ||||    ||   
 uc ucca   ga  uuuguuagcucgU  AUUCAUC A UGUGUU  CGcu    ca  a
a  -    -ac  ac             AA       C G      -A    --uu  ag 


Annotation confidence Not enough data
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Genome context
4_group1: 1722916-1723031 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dps-mir-1002
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-1002-5p

Accession MIMAT0012247
Description Drosophila pseudoobscura dps-miR-1002-5p mature miRNA
Sequence 29 - CUAAGUAGUUGAUACAAGGGCGA - 51
Evidence experimental
Illumina [1]

Mature dps-miR-1002-3p

Accession MIMAT0012248
Description Drosophila pseudoobscura dps-miR-1002-3p mature miRNA
Sequence 70 - GCAUUGUGUGACCUACUUAAAU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9