miRBase entry: dps-mir-2509

Stem-loop dps-mir-2509


Accession
MI0011635
Description
Drosophila pseudoobscura dps-mir-2509 precursor miRNA


Sequence

ugaugcaaauggagcagucguguUUUAAGGUACAGACUUUGAGUCuauucuaggcaucaauuuucguaucuuuuaauucgucuggcgccaacagcaacag
((.(((...(((.((((.((.(((..(((((((.((..(((((((((...))))).))))..)).)))))))..))).)).)).)).)))...))).)).

Structure
-  a   aaa   a  -  u  u   UU       A  CU    -     u 
 ug ugc   ugg gc ag cg guU  AAGGUAC GA  UUGA GUCua  
 || |||   ||| || || || |||  ||||||| ||  |||| ||||| u
 ac acg   acc cg uc gc uaa  uucuaug uu  aacu cggau  
g  a   aca   g  g  u  u   uu       c  uu    a     c 


Annotation confidence Not enough data
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Genome context
4_group4: 3182231-3182330 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dps-mir-2509
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2509

Accession MIMAT0012294
Description Drosophila pseudoobscura dps-miR-2509 mature miRNA
Sequence 24 - UUUAAGGUACAGACUUUGAGUC - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9