Stem-loop sequence dps-mir-2538

Accession

MI0011672 (change log)

Description

Drosophila pseudoobscura miR-2538 stem-loop

Stem-loop

   -     -cu   uua     -       a     ug     a    aa      uauau 
5'  gaaca   guu   ugcgg uugaagu guagg  gaaga cuaa  uauuug     u
    |||||   |||   ||||| ||||||| |||||  ||||| ||||  ||||||      
3'  uuugu   cag   acgcu agcuuca cgucc  cuuuu gauu  auaagu     u
   a     ccc   -ca     u       a     gu     a    aa      uaacu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): XL_group1e: 8363244-8363359 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-2538

• dps-mir-2541: XL_group1e: 8367679-8367786 [-]
• dps-mir-2540: XL_group1e: 8367333-8367441 [-]
• dps-mir-2523: XL_group1e: 8366995-8367108 [-]
• dps-mir-2539: XL_group1e: 8366678-8366788 [-]
• dps-mir-2522a: XL_group1e: 8365900-8366011 [-]
• dps-mir-2522b: XL_group1e: 8363413-8363514 [-]
• dps-mir-2538: XL_group1e: 8363244-8363359 [-]
• dps-mir-2521: XL_group1e: 8362756-8362842 [-]
• dps-mir-2520: XL_group1e: 8362599-8362718 [-]
• dps-mir-2537: XL_group1e: 8362508-8362587 [-]
• dps-mir-2536: XL_group1e: 8362342-8362452 [-]

Database links

• miRBase Tracker:MI0011672

Mature sequence dps-miR-2538-5p

• Accession: MIMAT0012330
• Previous IDs: dps-miR-2538
• Sequence: 28 - uagguggaagaacuaaaauauu - 49
• Evidence: experimental; Illumina [1]

Mature sequence dps-miR-2538-3p

• Accession: MIMAT0012331
• Previous IDs: dps-miR-2538*
• Sequence: 68 - uaaauuagauuuucugccugca - 89
• Evidence: experimental; Illumina [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).