Stem-loop sequence dps-mir-2540

AccessionMI0011675 (change log)
DescriptionDrosophila pseudoobscura miR-2540 stem-loop
Stem-loop 
   u  aua    aaau  uuu             c   a     u     uaauac 
5'  gu   uuuc    gu   uaguucuucagau gcc gguau auaug      u
    ||   ||||    ||   ||||||||||||| ||| ||||| |||||       
3'  ca   aaag    ca   auuaagaagucua ugg ccaua ugugc      u
   a  acg    acac  uuu             c   -     u     caaaaa
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dpse_r2.26_FB2012_01) Overlapping transcripts
XL_group1e: 8367333-8367441 [-]
intergenic
Clustered miRNAs
< 10kb from dps-mir-2540
dps-mir-2524XL_group1e: 8377507-8377599 [-]
dps-mir-2542-2XL_group1e: 8376961-8377045 [-]
dps-mir-2524XL_group1e: 8376659-8376751 [-]
dps-mir-2543a-2XL_group1e: 8373978-8374093 [-]
dps-mir-2542-1XL_group1e: 8373614-8373698 [-]
dps-mir-2541XL_group1e: 8367679-8367786 [-]
dps-mir-2540XL_group1e: 8367333-8367441 [-]
dps-mir-2523XL_group1e: 8366995-8367108 [-]
dps-mir-2539XL_group1e: 8366678-8366788 [-]
dps-mir-2522aXL_group1e: 8365900-8366011 [-]
dps-mir-2522bXL_group1e: 8363413-8363514 [-]
dps-mir-2538XL_group1e: 8363244-8363359 [-]
dps-mir-2521XL_group1e: 8362756-8362842 [-]
dps-mir-2520XL_group1e: 8362599-8362718 [-]
dps-mir-2537XL_group1e: 8362508-8362587 [-]
dps-mir-2536XL_group1e: 8362342-8362452 [-]
Database links

Mature sequence dps-miR-2540-5p

Accession MIMAT0012336
Previous IDsdps-miR-2540*
Sequence

26 -  

uucagaucgccagguauuauaug

 - 48

Get sequence
Evidence experimental; Illumina [1]

Mature sequence dps-miR-2540-3p

Accession MIMAT0012337
Previous IDsdps-miR-2540
Sequence

65 -  

uguuauaccggucaucugaaga

 - 86

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).