miRBase entry: dps-mir-2542-2

Stem-loop dps-mir-2542-2


Accession
MI0011680
Description
Drosophila pseudoobscura dps-mir-2542-2 precursor miRNA
Gene family
MIPF0000889; mir-2542


Sequence

gggcuuauauuugUAUUUUUGCUCGGACAUUUAUGUacaauuugagcgucaUAGAUGGUUGCAGCAUAAAUAGAauuauuagccc
(((((.(((.((.(((((.((((((..((((((((.((.........))))))))))..)).)))).))))).)).))).)))))

Structure
     u   u  g     U    -  GA        U  aau 
gggcu aua uu UAUUU UGCU CG  CAUUUAUG ac   u
||||| ||| || ||||| |||| ||  |||||||| ||   u
cccga uau aA AUAAA ACGA GU  GUAGAUac ug   g
     u   u  G     U    C  UG        -  cga 


Annotation confidence Not enough data
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Genome context
XL_group1e: 8376961-8377045 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from dps-mir-2542-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2542-5p

Accession MIMAT0012340
Description Drosophila pseudoobscura dps-miR-2542-5p mature miRNA
Sequence 14 - UAUUUUUGCUCGGACAUUUAUGU - 36
Evidence experimental
Illumina [1]

Mature dps-miR-2542-3p

Accession MIMAT0012341
Description Drosophila pseudoobscura dps-miR-2542-3p mature miRNA
Sequence 52 - UAGAUGGUUGCAGCAUAAAUAGA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9