miRBase entry: dps-mir-2544

Stem-loop dps-mir-2544


Accession
MI0011684
Description
Drosophila pseudoobscura dps-mir-2544 precursor miRNA


Sequence

auuggucuauacaaauggucuauagcuuUCCUGGCUCUCGGCUCUAUAUGcuuuguuuauuuauacuaUAUAGAACUGAGCAACAGGUAAauuauuuaccaccaa
.(((((..........(((..((((.(((((((...(((((.((((((((...(((......))).)))))))).)))))...)))).)))))))..))))))))

Structure
a     cuauacaaau   cu    c   -    GCU     C        cuu   uu 
 uuggu          ggu  auag uuU CCUG   CUCGG UCUAUAUG   ugu  a
 |||||          |||  |||| ||| ||||   ||||| ||||||||   |||   
 aacca          cca  uauu aAA GGAC   GAGUC AGAUAUau   aua  u
-     ----------   uu    -   U    AAC     A        --c   uu 


Annotation confidence Not enough data
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Genome context
XL_group1e: 8378925-8379029 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from dps-mir-2544
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2544-5p

Accession MIMAT0012348
Description Drosophila pseudoobscura dps-miR-2544-5p mature miRNA
Sequence 29 - UCCUGGCUCUCGGCUCUAUAUG - 50
Evidence experimental
Illumina [1]

Mature dps-miR-2544-3p

Accession MIMAT0012349
Description Drosophila pseudoobscura dps-miR-2544-3p mature miRNA
Sequence 69 - UAUAGAACUGAGCAACAGGUAA - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9