miRBase entry: dps-mir-2554

Stem-loop dps-mir-2554


Accession
MI0011696
Description
Drosophila pseudoobscura dps-mir-2554 precursor miRNA


Sequence

cugagaucaucaacuaaaauucauccuuuauuauuugUAGGCCAGUGAUUUCACAGUACGuuuguuuucuucuacaUAUUGUCAGAUCUCUGUCCUCAaaauauucaaggcuuucag
((((((..................((((...(((((..(((.(((.(((((.((((((.((............)).)))))).))))).))).)))..)))))...)))).))))))

Structure
      ucaucaacuaaaauucau    uau     gU   C   U     C      C  uuguu 
cugaga                  ccuu   uauuu  AGG CAG GAUUU ACAGUA Gu     u
||||||                  ||||   |||||  ||| ||| ||||| |||||| ||      
gacuuu                  ggaa   auaaa  UCC GUC CUAGA UGUUAU ca     u
      -----------------c    cuu     AC   U   U     C      a  ucuuc 


Annotation confidence Not enough data
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Genome context
3: 8680335-8680451 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-2554
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2554-5p

Accession MIMAT0012368
Description Drosophila pseudoobscura dps-miR-2554-5p mature miRNA
Sequence 38 - UAGGCCAGUGAUUUCACAGUACG - 60
Evidence experimental
Illumina [1]

Mature dps-miR-2554-3p

Accession MIMAT0012369
Description Drosophila pseudoobscura dps-miR-2554-3p mature miRNA
Sequence 77 - UAUUGUCAGAUCUCUGUCCUCA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9