miRBase entry: dps-mir-2558-2

Stem-loop dps-mir-2558-2


Accession
MI0011702
Description
Drosophila pseudoobscura dps-mir-2558-2 precursor miRNA
Gene family
MIPF0000817; mir-2558


Sequence

uccaugugguuagGUAGGUACCCAAAUAUCUUGAUuauaauuuuccauuaggaacucacaCAGAUAUUUCUGUACCUACAGgccuugucuaugg
.(((((.((((..((((((((..(((((((((((........((((....)))).)))...))))))))..)))))))).)))).....)))))

Structure
u     ----u    ag        CC        ---   Uuauaauu    a 
 ccaug     gguu  GUAGGUAC  AAAUAUCU   UGA        uucc u
 |||||     ||||  ||||||||  ||||||||   |||        ||||  
 gguau     ccgG  CAUCCAUG  UUUAUAGA   acu        aagg u
-     cuguu    -A        UC        Cac   -------c    a 


Annotation confidence Not enough data
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Genome context
4_group1: 2598280-2598373 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dps-mir-2558-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2558-5p

Accession MIMAT0012378
Description Drosophila pseudoobscura dps-miR-2558-5p mature miRNA
Sequence 14 - GUAGGUACCCAAAUAUCUUGAU - 35
Evidence experimental
Illumina [1]

Mature dps-miR-2558-3p

Accession MIMAT0012379
Description Drosophila pseudoobscura dps-miR-2558-3p mature miRNA
Sequence 61 - CAGAUAUUUCUGUACCUACAG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9