miRBase entry: dsi-mir-1003

Stem-loop dsi-mir-1003


Accession
MI0011732
Description
Drosophila simulans dsi-mir-1003 precursor miRNA
Gene family
MIPF0000923; mir-1003


Sequence

gcacugaagcugcgcagaagGUGGGUAUCUGGAUGUGGUUGGcucuggcgguccUCUCACAUUUACAUAUUCACAGgcgccgugagcugc
(((((...((.((((.....((((((((.(((((((((..((((.....))))..).)))))))).))))))))..)))).)).)).)))

Structure
   -  gaa  u    agaag        C        - UU    c 
gca cu   gc gcgc     GUGGGUAU UGGAUGUG G  GGcu u
||| ||   || ||||     |||||||| |||||||| |  |||| g
cgu ga   ug cgcg     CACUUAUA AUUUACAC C  cugg g
   c  --g  c    ---GA        C        U Uc    c 


Annotation confidence Not enough data
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Genome context
chr3R: 20323140-20323229 [+]

Database links

Mature dsi-miR-1003-5p

Accession MIMAT0012427
Description Drosophila simulans dsi-miR-1003-5p mature miRNA
Sequence 21 - GUGGGUAUCUGGAUGUGGUUGG - 42
Evidence experimental
Illumina [1]

Mature dsi-miR-1003-3p

Accession MIMAT0012428
Description Drosophila simulans dsi-miR-1003-3p mature miRNA
Sequence 55 - UCUCACAUUUACAUAUUCACAG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9