miRBase entry: dsi-mir-1002

Stem-loop dsi-mir-1002


Accession
MI0011738
Description
Drosophila simulans dsi-mir-1002 precursor miRNA
Gene family
MIPF0000909; mir-1002


Sequence

ggaaauauuuagaaauuauauauUUAAGUAGUGGAUACAAAAGGCGAuuugauauaaaaguauCGCAUUGUAUGGCCUACUUAACUagcugauuuuguauucc
((((.(((...(((((((..((.((((((((...((((((...(((((.............))))).))))))...)))))))).))..))))))))))))))

Structure
    a   uua       ua  u        UGG      AAG     uugau 
ggaa uau   gaaauua  ua UUAAGUAG   AUACAA   GCGAu     a
|||| |||   |||||||  || ||||||||   ||||||   |||||     u
ccuu aug   uuuuagu  aU AAUUCAUC   UAUGUU   CGCua     a
    -   ---       cg  C        CGG      --A     ugaaa 


Annotation confidence Not enough data
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Genome context
chr2L: 13506522-13506624 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dsi-mir-1002
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-1002-5p

Accession MIMAT0012439
Description Drosophila simulans dsi-miR-1002-5p mature miRNA
Sequence 24 - UUAAGUAGUGGAUACAAAAGGCGA - 47
Evidence experimental
Illumina [1]

Mature dsi-miR-1002-3p

Accession MIMAT0012440
Description Drosophila simulans dsi-miR-1002-3p mature miRNA
Sequence 64 - CGCAUUGUAUGGCCUACUUAACU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9