miRBase entry: dsi-mir-982c

Stem-loop dsi-mir-982c


Accession
MI0011782
Description
Drosophila simulans dsi-mir-982c precursor miRNA
Gene family
MIPF0000843; mir-982


Sequence

aguuaaaaaacgaaaucaugcgagaUCUUGGACAAAUAUCAAGUAGAUuauuauuauacaucaauUUAUUGUUAUUUGUCCUUGAACuuaauuguuuuacagcug
((((..(((((((........(((.((..(((((((((.(((.((((((.............))))))))).)))))))))..)).)))..)))))))..)))).

Structure
-    aa       aaucaugc   a  UU         U   G      auuau 
 aguu  aaaacga        gag UC  GGACAAAUA CAA UAGAUu     u
 ||||  |||||||        ||| ||  ||||||||| ||| ||||||     a
 ucga  uuuuguu        uuC AG  CCUGUUUAU GUU AUUuaa     u
g    ca       ------aa   A  UU         U   -      cuaca 


Annotation confidence Not enough data
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Genome context
chrX: 3273520-3273624 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dsi-mir-982c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-982c-3p

Accession MIMAT0012513
Description Drosophila simulans dsi-miR-982c-3p mature miRNA
Sequence 66 - UUAUUGUUAUUUGUCCUUGAAC - 87
Evidence experimental
Illumina [1-2]

Mature dsi-miR-982c-5p

Accession MIMAT0037359
Description Drosophila simulans dsi-miR-982c-5p mature miRNA
Sequence 26 - UCUUGGACAAAUAUCAAGUAGAU - 48
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250