miRBase entry: mtr-MIR2592o

Stem-loop mtr-MIR2592o


Accession
MI0011822
Description
Medicago truncatula mtr-MIR2592o precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592o
(2 sentences)

Sequence

uggggcaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGCcaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaaaaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
..(((..(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.((((((((((((.(((((((((.....(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).))).....))))))))).)))))))))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).)))

Structure
ug   ca         c  ca                         c  a             c            a         gugag   u c         u      c     c  cc  a    g 
  ggg  aauucaaac ug  aaaCAACAGGACUCAAGCAUUUCGC aa caccucauguuuu ccuuugaaaaua uaaauuuuu     gcu g uuuagauga gguauu aagug ca  ga uuga  
  |||  ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||     ||| | ||||||||| |||||| ||||| ||  || |||| g
  ucc  uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaa     cga c aaaucuacu ccauaa uucac gu  cu aacu  
--   -a         a  ag                         -  c             a            a         aaaua   c -         u      -     a  uc  -    u 


Annotation confidence Not enough data
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Genome context
chr4: 34969555-34969812 [+]

Database links

Mature mtr-miR2592o-3p

Accession MIMAT0013275
Description Medicago truncatula mtr-miR2592o-3p mature miRNA
Sequence 219 - AAAUGCUUGAGUCCUGUUGUU - 239
Evidence experimental
454 [1], Illumina [2]

Mature mtr-miR2592o-5p

Accession MIMAT0020943
Description Medicago truncatula mtr-miR2592o-5p mature miRNA
Sequence 25 - CAACAGGACUCAAGCAUUUCGC - 46
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796

  2. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010