miRBase entry: mtr-MIR2592q

Stem-loop mtr-MIR2592q


Accession
MI0011824
Description
Medicago truncatula mtr-MIR2592q precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592q
(2 sentences)

Sequence

gggauaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGCcaaacaccucauguuuucccuuugaaaauaauaaauuucugugaggcuagcuuuggaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauacauucaucuaaaccagcauaacaaaaauuuaauacuuucaaaggagaaacaugaggcgcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuagcc
......(((((((((.((..(((((((((((((((((((((((((.((.(.(((((((((((.(((((((((.((.(((((((.(((...(((.(.(((((((((..(((((.(((((.((..((.((((...))))))..)).))))))))))..)))))))))).)))...))).))))))).)).))))))))).))))))))))).).)))))))))))))))))))))))))))..)).)))))))))....

Structure
gggaua         c  ca                         c  a a           c         a  a       c   gag   a c         ug     c     c  cc  a    g 
      aauucaaac ug  aaaCAACAGGACUCAAGCAUUUCGC aa c ccucauguuuu ccuuugaaa ua uaaauuu ugu   gcu g uuuggauga  guauu aagug ca  ga uuga  
      ||||||||| ||  ||||||||||||||||||||||||| || | ||||||||||| ||||||||| || ||||||| |||   ||| | |||||||||  ||||| ||||| ||  || |||| g
      uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu g ggaguacaaag ggaaacuuu au auuuaaa aca   cga c aaaucuacu  cauaa uucac gu  cu aacu  
--ccga         a  ag                         -  c c           a         c  a       a   aua   c -         ua     -     a  uc  -    u 


Annotation confidence Not enough data
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Genome context
chr4: 47247440-47247696 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2592q-3p

Accession MIMAT0013277
Description Medicago truncatula mtr-miR2592q-3p mature miRNA
Sequence 218 - AAAUGCUUGAGUCCUGUUGUU - 238
Evidence experimental
454 [1], Illumina [2]

Mature mtr-miR2592q-5p

Accession MIMAT0020944
Description Medicago truncatula mtr-miR2592q-5p mature miRNA
Sequence 24 - CAACAGGACUCAAGCAUUUCGC - 45
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796

  2. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010