miRBase entry: mtr-MIR2593c

Stem-loop mtr-MIR2593c


Accession
MI0011829
Description
Medicago truncatula mtr-MIR2593c precursor miRNA
Gene family
MIPF0000875; MIR2593


Sequence

uuauaagcaaaaguuuacauuuuagauucauucauuuaaugaugcacauggucuuuauuauagaccacauacaucaUUAAAUGAAUGAACCUAGAAUauaguuuuuugcuuauau
.((((((((((((.(((.(((((((.((((((((((((((((((....((((((.......))))))....)))))))))))))))))).))))))).))).)))))))))))).

Structure
u            u   c       a                  caca      uu 
 uauaagcaaaag uua auuuuag uucauucauuuaaugaug    uggucu  a
 |||||||||||| ||| ||||||| ||||||||||||||||||    ||||||  u
 auauucguuuuu gau UAAGAUC AAGUAAGUAAAUUacuac    accaga  u
u            u   a       C                  auac      ua 


Annotation confidence Not enough data
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Genome context
chr3: 27953809-27953923 [+]

Database links

Mature mtr-miR2593c

Accession MIMAT0013282
Description Medicago truncatula mtr-miR2593c mature miRNA
Sequence 77 - UUAAAUGAAUGAACCUAGAAU - 97
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796