miRBase entry: mtr-MIR2111n

Stem-loop mtr-MIR2111n


Accession
MI0011846
Description
Medicago truncatula mtr-MIR2111n precursor miRNA
Gene family
MIPF0000754; MIR2111

Literature search
2 open access papers mention mtr-MIR2111n
(8 sentences)

Sequence

uauauugggugaggaugggaUAAUCUGCAUCCUGAGGUUUAaaacaauaguuacguaauuaccccuaaaaaaauuaguuacauaaucguuucuaagccuuggagugcagauuaucuuuuccuuaucaccuaugc
.....((((((((((.((((((((((((((.((((((((((((((....((((.(((((((.............))))))).)))).)))).)))))))))).)))))))))))))).)))...)))))))...

Structure
uauau       ---   u              C          -    aaua    c       ccccu 
     uggguga   gga gggaUAAUCUGCAU CUGAGGUUUA aaac    guua guaauua     a
     |||||||   ||| |||||||||||||| |||||||||| ||||    |||| |||||||     a
     auccacu   ccu uucuauuagacgug gguuccgaau uuug    uaau cauugau     a
--cgu       auu   u              a          c    ---c    a       uaaaa 


Annotation confidence Not enough data
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Genome context
chr7: 16637529-16637662 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mtr-MIR2111n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2111n

Accession MIMAT0013299
Description Medicago truncatula mtr-miR2111n mature miRNA
Sequence 21 - UAAUCUGCAUCCUGAGGUUUA - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796