miRBase entry: mtr-MIR2608

Stem-loop mtr-MIR2608


Accession
MI0011861
Description
Medicago truncatula mtr-MIR2608 precursor miRNA


Sequence

auugcaaagagaaaugauauuuguacaacuauuuucuaacaacuuuuugacaacuuucucucucagacucacauuaucuucuuauucccucucuuccuuuuucucucucucucucucucucuauuauuuuugaccaaucaaaagagagaaaaccaaaguugucaugaaaguuguaccaaagaGUUGUACAUAUAUCACUACUCUauugcaaa
.((((((((((...((((((.(((((((((.((((...(((((((((((((((((((.(((...)))...............................((((((((((....................(((((....)))))))))))))))..)))))))))).)))))))))...))))))))))))).))))))...)))).)))))).

Structure
a      -    aaa      u         a    cua         -          cucucucagacucacauuaucuucuuauucccucucuuccu          cucucucucucucuauuauu     c 
 uugcaa agag   ugauau uguacaacu uuuu   acaacuuuu ugacaacuuu                                         uuuucucucu                    uuuga c
 |||||| ||||   |||||| ||||||||| ||||   ||||||||| ||||||||||                                         ||||||||||                    |||||  
 aacguu UCUC   ACUAUA ACAUGUUGa gaaa   uguugaaag acuguugaaa                                         aaaagagaga                    aaacu a
a      a    AUC      U         -    cca         u          ---------------------------------------cc          --------------------     a 


Annotation confidence Not enough data
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Genome context
chr3: 29324716-29324927 [+]

Database links

Mature mtr-miR2608

Accession MIMAT0013314
Description Medicago truncatula mtr-miR2608 mature miRNA
Sequence 183 - GUUGUACAUAUAUCACUACUCU - 204
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796