Stem-loop mtr-MIR2610a

Accession

MI0011865

Description

Medicago truncatula mtr-MIR2610a precursor miRNA

Gene family

MIPF0000988; MIR2610

Literature search

1 open access papers mention mtr-MIR2610a
(1 sentences)

Sequence

aAGAUUGAGACUUGUAUGGCUUcguugaaggaugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuuaacaguaagccugggauguucgacccuaccagagguucuuuccacagugcugguuucauucaugauucaccagagaccaaugcaauuuuagaugaugcaccuggaggagugacaccggucuuugugacgccuggaggagcuugcugcaacuggauugcuguugacauuccuucugugacacccugcucuaaguaauguguuugucuugucuuuuguuguuuuuuguuuuuaagaaaacuccuuucguucugcccaaggcgaaagugaaaucauguagggcuuuguu
..(((.(((.(((((((((.((((..((((((......((.((((((((((...(((((..(((..(((((....)))))..)))..)))))............((((((((.......)))))))).(((((((((((((........)))..((((..((......(((((.((((((.((((((........((((.(.....((((.((......)))))))))))..)))))).))))))..)))))))..)))).)).))))))))...)))))))))).)).....))))))...(((((..((((...))))..)))))................(((((((.......)))))))..(((((((.((.....))))))))))))).))))))))).))).)))

Structure

aA   U   A         C    -----------------------------------------------------------------------------------------uu      ugcccg  g          gaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuuaa        -  gggauguucgacccua    ag  ucuuuc     -u      u      augauuca    a accaa    a  uu 
  GAU GAG CUUGUAUGG UUcg                                                                                           gaagga      ga aguaauucag                                                                             caguaagc cu                ccag  gu      cacag  gcuggu ucauuc        ccag g     ugca uu  a
  ||| ||| ||||||||| ||||                                                                                           ||||||      || ||||||||||                                                                             |||||||| ||                ||||  ||      |||||  |||||| ||||||        |||| |     |||| ||   
  uug uuc ggauguacu aagu                                                                                           cuuccu      uu ucguuagguc                                                                             gucguucg gg                gguc  ca      guguu  uggcca agugag        gguc c     acgu ag  g
--   u   g         a    gaaagcggaacccgucuugcuuuccucaaaagaauuuuuguuuuuuguuguuuucuguucuguuuguguaaugaaucucgucccacagugu      -uacag  g          --------------------------------------------------------------------------aac        a  ---------------a    cg  ------     uc      c      ------ga    - -----    -  ua 

Annotation confidence Not enough data

Genome context

chr6: 10558277-10558688 [-]

Mature mtr-miR2610a

• Accession: MIMAT0013318
• Description: Medicago truncatula mtr-miR2610a mature miRNA
• Sequence: 2 - AGAUUGAGACUUGUAUGGCUU - 22
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796