miRBase entry: mtr-MIR2611

Stem-loop mtr-MIR2611


Accession
MI0011867
Description
Medicago truncatula mtr-MIR2611 precursor miRNA


Sequence

ugauuuugUAUUUGUCAGUGUUUGAUGAAucugugggaugcgugcuuggucaacaagaugagacuggaaagaaagaacaugcuaucuacuaucugagcaagaaguucaccgacugugaaacucgguauacaaugcuugagaagacuuguuguggucuagcuugggcugccaaacgccugcgucauuauuuggugaaucauacaacuugguugauauccagaauggauccgaucaaguauaucuuugagaaagcugcuguuacugggaagauugcacgcuggcagaugcuuuugucu
.(((...((((((((((((((.((((...((.((((.(.(((.((((..((((..((((((((.(((..(((.((......)).))).)))))).........(((((((((..((((..(..(((.......(((((((.(((((......)))))..)))))))........))).)..))))...)))))))))......(((((((((..(((((...))))).))))))))).)))))))))..)))))))).)))).))....)))).))))))))))))))....))).

Structure
u   -uuu              U    -GAA  u    g u   u    gg    ca     agacuggaaagaaagaacaugcuaucuacuaucugagcaagaa         -cu    aa uc   -auacaau       -a     ug 
 gau    gUAUUUGUCAGUGU UGAU    uc gugg a gcg gcuu  ucaa  agaug                                           guucaccga   guga  c  ggu        gcuugag  agacu  u
 |||    |||||||||||||| ||||    || |||| | ||| ||||  ||||  |||||                                           |||||||||   ||||  |  |||        |||||||  |||||   
 cug    cguagacggucgca guua    gg cauu u cgu cgaa  aguu  ucuau                                           uaagugguu   uacu  g  ccg        cggguuc  ucugg  u
u   uuuu              c    gaag  u    g -   -    ag    --     --augaacuagccuagguaagaccuauaguugguucaacauac         uau    gc -u   caaaccgu       ga     ug 


Annotation confidence Not enough data
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Genome context
chr2: 4044572-4044867 [+]

Database links

Mature mtr-miR2611

Accession MIMAT0013320
Description Medicago truncatula mtr-miR2611 mature miRNA
Sequence 9 - UAUUUGUCAGUGUUUGAUGAA - 29
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796