miRBase entry: mtr-MIR2615c

Stem-loop mtr-MIR2615c


Accession
MI0011878
Description
Medicago truncatula mtr-MIR2615c precursor miRNA
Gene family
MIPF0000898; MIR2615


Sequence

ccguauuuuaaaaugguucacguucccuuuuauucguuuuuuuguaccauuuaaaguuuggguuucuugucuuuagucguucaaaaaguuuuuauuuuuacauuuaaaucaacguucgcaucucacacuuucauuuuuacgucgcauagucuuuuuuuuuaaucguaacgaucacgucaaaaaaagagaaggCCUGAUCGCAUUUUAAAAGGCgu
.(((.(((((((((((.(((.................(((((((.((...((((((...((....))...))))))..)).))))))).......................((((.......................)))).((....(((((((((((...(((.......)))..)))))))))))..)).))).).)))))))))).))).

Structure
c   a          - u   cguucccuuuuauucguuuuuuuguaccauuuaaaguuuggguuucuugucuuuagucguucaaaaaguuuuuauuuuuacauuuaaaucaacguucgcaucucacacuuucauuuuuacguc  auag           aau   aa 
 cgu uuuuaaaaug g uca                                                                                                                           gc    ucuuuuuuuuu   cgu  c
 ||| |||||||||| | |||                                                                                                                           ||    |||||||||||   |||  g
 gCG AAAAUUUUAC C AGU                                                                                                                           Cg    agagaaaaaaa   gca  a
u   G          G U   --------------------------------------------------------------------------------------------------------------------------C  --ga           -cu   cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 2027418-2027632 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2615c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2615c

Accession MIMAT0013331
Description Medicago truncatula mtr-miR2615c mature miRNA
Sequence 193 - CCUGAUCGCAUUUUAAAAGGC - 213
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796