miRBase entry: mtr-MIR2630o

Stem-loop mtr-MIR2630o


Accession
MI0011934
Description
Medicago truncatula mtr-MIR2630o precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630o
(2 sentences)

Sequence

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuauaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaauuaauuuuacaaggacuaaaacaaaauaucaaggaucaaaaccaaauuuuuuauauuugcagga
.(((((((((((((((.(((((((((((((((((((((((((((((((.(((((.((((((...(((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...)))))))))...)))))).))))).))))))))))))))))))))))))))))))).))))))))))))))).

Structure
c               u                               a     a      cau         aaa       cua      ----------uc          -   u 
 ccugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuu uaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||   |||||||||   |||||||   ||||||            |||||||||| ||| u
 ggacguuuauauuuu uaaaccaaaacuaggaacuauaaaacaaaau aggaa auuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg agu  
a               u                               c     c      auu         cua       aac      caucuuauaaac          g   u 


Annotation confidence Not enough data
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Genome context
chr5: 6240185-6240412 [+]

Database links

Mature mtr-miR2630o

Accession MIMAT0013387
Description Medicago truncatula mtr-miR2630o mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796