miRBase entry: mtr-MIR2630s

Stem-loop mtr-MIR2630s


Accession
MI0011938
Description
Medicago truncatula mtr-MIR2630s precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630s
(2 sentences)

Sequence

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauuaaaauuggucccuauaauauucauuuuaguucucauuuugagggacuaaaauuaaauauucuacauauuacaaggaccaaaucgaauaugaaucaauuuuacaaggacuaaaacaaaacaccaaggaccaaaacccaauuuuuuauauuugcaggga
((((((((((((((((.(((.((((((((((((((((.((((((((((.((((((((((((...((((((((....(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))....))))))))...)))))))))))).)))))))))).)))))))))))))))).))).)))))))))))))))).

Structure
-                u   U                A          a            cau        aaaa       cua      ----------uc          -   u 
 cccugcaaauauagaa auu GGUUUUGGUCCUUGGU UUUuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau            auuuuaguuc uca  
 |||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||   ||||||||    |||||||   ||||||            |||||||||| ||| u
 gggacguuuauauuuu uaa ccaaaaccaggaacca aaaacaaaau aggaacauuuua   aaguauaa    aaccagg   auuaua            uaaaaucagg agu  
a                u   c                c          c            acu        gcua       aac      caucuuauaaau          g   u 


Annotation confidence Not enough data
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Genome context
chr7: 31925699-31925927 [+]

Database links

Mature mtr-miR2630s

Accession MIMAT0013391
Description Medicago truncatula mtr-miR2630s mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796