miRBase entry: mtr-MIR2630u

Stem-loop mtr-MIR2630u


Accession
MI0011940
Description
Medicago truncatula mtr-MIR2630u precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630u
(2 sentences)

Sequence

ccaugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaagaccaaauccaauaugauuuaaauuuuacaaggacuaaaacaaaauacuaaggaccaaaaccaaauuuuuuauauuugcaggg
((.(((((((((((((.(((((((((((((((((((((((((((((((.((((((((((((....((((((((...((((((....((((((..(((((((((((........)))))))))))............))))))....))))))...)))))))).....)))))))))))).))))))))))))))))))))))))))))))).))))))))))))))).

Structure
-  a             u                               a            -cauu        aaa      ccua      ----------uc           cgu 
 cc ugcaaauauagaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau     ucauauug   uugguc    uaauau            auuuuaguccu   u
 || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||     ||||||||   ||||||    ||||||            |||||||||||    
 gg acguuuauauuuu uaaaccaaaaccaggaaucauaaaacaaaau aggaacauuuua     aguauaac   aaccag    auuaua            uaaaaucaggg   u
g  -             u                               c            aauuu        cua      aaac      caucuuauaaac           agu 


Annotation confidence Not enough data
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Genome context
chr8: 20150884-20151112 [+]

Database links

Mature mtr-miR2630u

Accession MIMAT0013393
Description Medicago truncatula mtr-miR2630u mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796