miRBase entry: mtr-MIR2649

Stem-loop mtr-MIR2649


Accession
MI0011968
Description
Medicago truncatula mtr-MIR2649 precursor miRNA


Sequence

agcuugauuguaagcaaguggauaaauggcaccuuuuguaagcucuucauauucauaaagagcuuacaAAAGGUGCCAAUUAUGAGUGUguuaaugaauauggua
.(((..(((...((((.....((((.(((((((((((((((((((((.((....)).))))))))))))))))))))).)))).....))))....)))..))).

Structure
a   ug   -gua    agugg    a                     c  a 
 gcu  auu    agca     auaa uggcaccuuuuguaagcucuu au u
 |||  |||    ||||     |||| ||||||||||||||||||||| ||  
 ugg  uaa    uugU     UAUU ACCGUGGAAAacauucgagaa ua u
a   ua   guaa    GUGAG    A                     a  c 


Annotation confidence Not enough data
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Genome context
chr6: 19670625-19670729 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2649
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2649

Accession MIMAT0013421
Description Medicago truncatula mtr-miR2649 mature miRNA
Sequence 69 - AAAGGUGCCAAUUAUGAGUGU - 89
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796