Stem-loop mtr-MIR2652d

Accession

MI0011974

Description

Medicago truncatula mtr-MIR2652d precursor miRNA

Gene family

MIPF0000819; MIR2652

Sequence

gcgacuauagugcauaaggaaauccuuaugcacccugcauaaauccagaaaugguuuaugugaguuguacuuaaugcuuuccaguacucugcauaaggauuuccagcaccuugcauaaaauuaugcaaaaaccauuuuauugggaaaaugguuuuuguaaguuguacuccaaaaccauuucugaauuUAUGCAGGGUGCAUAAGGAUUucguuauacaccauaaccg
.((..(((.(((.((((.((((((((((((((((((((((((((.((((((((((((.((.((((...(((((((((.............))))((((..........))))(((((....)))))((((((((((((......)))))))))))).)))))...)))))))))))))))))).)))))))))))))))))))))))))).)))).))).)))..))

Structure

g  ac   a   c    g                          c            a  u    ugu     augcuuuccaguacucugcauaaggauuuccagcaccuugcauaaaauuaugc            au 
 cg  uau gug auaa gaaauccuuaugcacccugcauaaau cagaaaugguuu ug gagu   acuua                                                     aaaaaccauuuu  u
 ||  ||| ||| |||| |||||||||||||||||||||||||| |||||||||||| || ||||   |||||                                                     ||||||||||||   
 gc  aua cac uauu cuUUAGGAAUACGUGGGACGUAUuua gucuuuaccaaa ac cuca   ugaau                                                     uuuuugguaaaa  g
-  ca   c   a    g                          a            -  -    ugu     ----------------------------------------------------g            gg 

Annotation confidence Not enough data

Genome context

chr2: 12812989-12813215 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2652d

Mature mtr-miR2652d

• Accession: MIMAT0013427
• Description: Medicago truncatula mtr-miR2652d mature miRNA
• Sequence: 188 - UAUGCAGGGUGCAUAAGGAUU - 208
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796