miRBase entry: mtr-MIR2652h

Stem-loop mtr-MIR2652h


Accession
MI0011978
Description
Medicago truncatula mtr-MIR2652h precursor miRNA
Gene family
MIPF0000819; MIR2652


Sequence

ugcgguuaugguguauaaggaaaucuuuaugcacccugcauaaauucagaaaugauuuuggaguacaacacacagaaaccauuuccauagcaaaauaguuuuggcauaauuuuauguaaggugcugaaaauccuuaugcagggugcuggaaaccauuaaguacaucuaaugguuuugaaguacaacucacagaaaccauuuccggauuUAUGCAGGGUGCAUAAGGAUUccuuaugcaccauaaccgc
.(((((((((((((((((((((.((((((((((((((((((((((((.((((((.(((((((((........(((..(((....(((.(((......))).)))((((....))))...))).))).....(((.....)))(((((.((((((((((........))))))))))..))))).)))).)))))..)))))).)))))))))))))))))))))))))))))))))))))))))))))

Structure
u                     a                        a      -a     -    acaacacacagaaaccauuuccauagcaaaauaguuuuggcauaauuuuauguaaggugcugaaaauccuuaugcagg     -g          agu 
 gcgguuaugguguauaaggaa ucuuuaugcacccugcauaaauuc gaaaug  uuuug gagu                                                                              gugcu  gaaaccauua   a
 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||| ||||                                                                              |||||  ||||||||||    
 cgccaauaccacguauuccUU AGGAAUACGUGGGACGUAUuuagg cuuuac  aagac cuca                                                                              cauga  uuuugguaau   c
-                     -                        c      ca     a    -----------------------------------------------------------------------------a     ag          cua 


Annotation confidence Not enough data
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Genome context
chr5: 7029666-7029913 [+]

Database links

Mature mtr-miR2652h

Accession MIMAT0013431
Description Medicago truncatula mtr-miR2652h mature miRNA
Sequence 209 - UAUGCAGGGUGCAUAAGGAUU - 229
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796