miRBase entry: mtr-MIR2652i

Stem-loop mtr-MIR2652i


Accession
MI0011979
Description
Medicago truncatula mtr-MIR2652i precursor miRNA
Gene family
MIPF0000819; MIR2652


Sequence

gcgguuauggugcauaagaaaauccuuaugcacccugcauaaauccagaaaugguuuuggaguacaacucacagaaaccauuuccacaguaaaaugguuuuggcauaauuggguugggauuuaugcaaggugcuggaaaucauuaaguacaucuaaugguuuugaaguacaacucacaaaaaccauuucugaauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaccg
.(((((((((((((((((.(((((((((((((((((((((((((.((((((((((((((((((.(((((((..((((((((((........))))))))))........))))))).............(((((.((((((((((........))))))))))..))))).)))).).))))))))))))).))))))))))))))))))))))))).)))))))))))))))))

Structure
g                 a                         c             - -    ------------------------------------------------------a       ------ca          cca 
 cgguuauggugcauaag aaauccuuaugcacccugcauaaau cagaaaugguuuu g gagu                                                       caacuca        gaaaccauuu   c
 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||                                                       |||||||        ||||||||||    
 gccaauaccacguauuc uUUAGGAAUACGUGGGACGUAUuua gucuuuaccaaaa c cuca                                                       guugggu        uuuugguaaa   a
-                 c                         a             a a    acaugaaguuuugguaaucuacaugaauuacuaaaggucguggaacguauuuagg       uaauacgg          aug 


Annotation confidence Not enough data
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Genome context
chr6: 21529035-21529269 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2652i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2652i

Accession MIMAT0013432
Description Medicago truncatula mtr-miR2652i mature miRNA
Sequence 196 - UAUGCAGGGUGCAUAAGGAUU - 216
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796