miRBase entry: mtr-MIR2659d

Stem-loop mtr-MIR2659d


Accession
MI0012010
Description
Medicago truncatula mtr-MIR2659d precursor miRNA
Gene family
MIPF0000830; MIR2659


Sequence

auucuacuucaaaucaauggcaucuucaaguucugccggugguucuucaucgaauauggauauagauacuucugcuuaugaaaucaaaggaagaacuaugucgauugaggaaugggagcuaaucauucaagcggaaaauccuguggauuucacuucucuaacucaCCAUGGGUGCGACUUGGUAAGauucuacaagaagcagaag
.((((.((((.......(((.(((((((((((.((((.(((((((((((......((.(((((((.(.(((((...............)))))).))))))).))))))))..(((((((.........)))(..((((((...))))))..).))))......))))).)))).)))))))..)))).)))...)))).)))).

Structure
a    a    aaaucaa   c    --       c    g     -----------------------------------------------------      ucgaau  g       a a     gcuuau 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                     ucuuca      au gauauag u cuucu      g
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                     ||||||      || ||||||| | |||||      a
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                     aggagu      ua cuguauc a gaagg      a
g    c    ----aac   u    AU       C    G     cucaaucucuucacuuuagguguccuaaaaggcgaacuuacuaaucgagggua      ------  g       a -     aaacua 


Annotation confidence Not enough data
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Genome context
chr5: 24064026-24064230 [+]

Database links

Mature mtr-miR2659d

Accession MIMAT0013463
Description Medicago truncatula mtr-miR2659d mature miRNA
Sequence 166 - CCAUGGGUGCGACUUGGUAAG - 186
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796