miRBase entry: mtr-MIR2670a

Stem-loop mtr-MIR2670a


Accession
MI0012025
Description
Medicago truncatula mtr-MIR2670a precursor miRNA
Gene family
MIPF0000855; MIR2670


Sequence

agugaucaaacuuuuuugggguaaaauagugaguagccgauuuggugaagugaucaaccauucugauaaguuuaaaucuguuuuuuuuuacuccugaaacuuuuuaccauggguaaaaggauuuuucuugggguauaaaaaaaaaaccagauuuaaauuuagcccaaggguugaugagguauuuuccuCAAGAAGGUUGCUCACUAUUUuaccccaagaugauuucac
.(.(((((.....(((((((((((((((((((((((((..(((((.(((((.(((((((.......((((((((((((((((((((((((((((.(((((((((((((...)))))))))...))))..))))))...)))))))).)))))))))))))).......))))))).).....)))).)))))..)))))))))))))))))))))))))))))).)..

Structure
-a u     aacuu                         ga     u    ----- g       auucuga              -        ---      -u    ---         a 
  g gauca     uuuugggguaaaauagugaguagcc  uuugg gaag     u aucaacc       uaaguuuaaaucug uuuuuuuu   uacucc  gaaa   cuuuuuacc  
  | |||||     |||||||||||||||||||||||||  ||||| ||||     | |||||||       |||||||||||||| ||||||||   ||||||  ||||   ||||||||| u
  c uuagu     agaaccccauUUUAUCACUCGUUGG  GAACu cuuu     a uaguugg       auuuaaauuuagac aaaaaaaa   augggg  cuuu   ggaaaaugg  
ca u     -----                         AA     c    uaugg g       gaacccg              c        aau      uu    uua         g 


Annotation confidence Not enough data
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Genome context
chr2: 24709014-24709241 [+]

Database links

Mature mtr-miR2670a

Accession MIMAT0013478
Description Medicago truncatula mtr-miR2670a mature miRNA
Sequence 189 - CAAGAAGGUUGCUCACUAUUU - 209
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796