miRBase entry: mtr-MIR2671j

Stem-loop mtr-MIR2671j


Accession
MI0012029
Description
Medicago truncatula mtr-MIR2671j precursor miRNA
Gene family
MIPF0000813; MIR2655


Sequence

uggcuuaauuacuuuuuuggucccuuaacuuaauuuuugguuucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguu
..((((((.........(((..((..(((..((((((((((...(((..(....)..))).))))))))))..)))..))..)))..........)))))).

Structure
ug      -uuacuuuuu   uc  uu   uu          uuc   uu g 
  gcuuaa          ugg  cc  aac  aauuuuuggu   guu  g u
  ||||||          |||  ||  |||  ||||||||||   |||  |  
  uggguu          acC  GG  UUG  UUGAAAAUUa   caa  c u
-u      uuuauucaau   CU  CU   CU          --u   uu c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 243605-243706 [+]

Database links

Mature mtr-miR2671j

Accession MIMAT0013482
Description Medicago truncatula mtr-miR2671j mature miRNA
Sequence 63 - UUAAAAGUUUCGUUUCGGUCC - 83
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796