miRBase entry: mtr-MIR2680d

Stem-loop mtr-MIR2680d


Accession
MI0012060
Description
Medicago truncatula mtr-MIR2680d precursor miRNA
Gene family
MIPF0000841; MIR2680


Sequence

auagggucuagaccuggcauaucuucauaggaccaugcaaaaauauccggauauucccggaggaguuggaugaucuucuguuuaaccccuuccucuagaguagcaccaaucuugauuucucgcuuguuuUCCUCGGUACCUAUGUUGAUaagcucaaucucuucuugg
.(((((...(((...(((.((((..(((((((((.....((((((..(((((((((..(((((((..((.(((........))).))..))))))).)))))...............)).))..))))))....))).))))))..)))).)))...)))..))))).

Structure
a     ucu   ccu   a    uu      -   augca      uc  -  ---------------     cc       uu  a   ucu 
 uaggg   aga   ggc uauc  cauagg acc     aaaaua  cg ga               uauuc  ggaggag  gg uga   u
 |||||   |||   ||| ||||  |||||| |||     ||||||  || ||               |||||  |||||||  || |||    
 guucu   ucu   ucg aUAG  GUAUCC UGG     Uuuugu  gc cu               augag  ucuccuu  cc auu   c
g     -uc   aac   a    UU      A   -CUCC      uc  u  uuaguucuaaccacg     -a       cc  a   ugu 


Annotation confidence Not enough data
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Genome context
chr3: 6163059-6163226 [+]

Database links

Mature mtr-miR2680d

Accession MIMAT0013513
Description Medicago truncatula mtr-miR2680d mature miRNA
Sequence 130 - UCCUCGGUACCUAUGUUGAU - 149
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796