Stem-loop bmo-mir-2733b-1

Accession

MI0012190

Description

Bombyx mori bmo-mir-2733b-1 precursor miRNA

Gene family

MIPF0000766; mir-2733

Literature search

1 open access papers mention bmo-mir-2733b-1
(6 sentences)

Sequence

4 reads, 1 reads per million, 2 experiments

ucucucuaauauagucaucacacucucaguugauauguguaacauucuaUCACUGGGUGCGUGAUGAUUGUgguagagau
..((((((.((((((((((((.(.((((((.((((.(((...)))..)))))))))).).)))))))))))).)))))).

Structure

uc      a            a u      u    -u   u 
  ucucua uauagucaucac c cucagu gaua  gug  
  |||||| |||||||||||| | |||||| ||||  ||| a
  agagau gUGUUAGUAGUG G GGGUCA CUau  uac  
-u      g            C U      -    cu   a 

Annotation confidence Not enough data

Genome context

NW_004581684.1: 346939-347018 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from bmo-mir-2733b-1

Mature bmo-miR-2733b

• Accession: MIMAT0013777
• Description: Bombyx mori bmo-miR-2733b mature miRNA
• Sequence: 50 - UCACUGGGUGCGUGAUGAUUGU - 71
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 19699294
   A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
   "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
   "Genomics (2009) 94:438-444


2. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52