Stem-loop isc-mir-275

Accession

MI0012273

Description

Ixodes scapularis isc-mir-275 precursor miRNA

Gene family

MIPF0000187; mir-275

Literature search

1 open access papers mention isc-mir-275
(4 sentences)

Sequence

gucuuuccucccguugccucuacgugcugcaucaggugcuugugacuacgcguucgaaagUCAGGUACCUGAAGUAGCGCGCGgaaggcuucggggcuggu
......(((((((..((((((.((((((((.(((((((((..(((((.((....))..)))))))))))))).)))))))).)).))))..)))))..)).

Structure

gucuuu  --     uu    -  a        a         ug     -a  c 
      cc  ucccg  gccu cu cgugcugc ucaggugcu  ugacu  cg g
      ||  |||||  |||| || |||||||| |||||||||  |||||  ||  
      gg  ggggc  cgga gG GCGCGAUG AGUCCAUGG  ACUga  gc u
-----u  uc     uu    a  C        A         --     aa  u 

Annotation confidence Not enough data

Genome context

DS945001: 243239-243339 [-]

Mature isc-miR-275

• Accession: MIMAT0012693
• Description: Ixodes scapularis isc-miR-275 mature miRNA
• Sequence: 61 - UCAGGUACCUGAAGUAGCGCGCG - 83
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68