miRBase entry: isc-mir-279

Stem-loop isc-mir-279


Accession
MI0012274
Description
Ixodes scapularis isc-mir-279 precursor miRNA
Gene family
MIPF0000184; mir-279

Literature search
1 open access papers mention isc-mir-279
(4 sentences)

Sequence

ccuaucguugcuauugaugacugugccucuaguccaugugaaucuagcucaUGACUAGAUCCACACUCAUCCAuagaagcggaacuuugucg
.....((((.((((.(((((.((((..(((((((.(((.(.......).))))))))))..)))).))))).)))).))))...........

Structure
------ccuau    g    u     c    cc       c   u aa 
           cguu cuau gauga ugug  ucuaguc aug g  u
           |||| |||| ||||| ||||  ||||||| ||| |  c
           gcga gauA CUACU ACAC  AGAUCAG Uac c  u
gcuguuucaag    a    C     C    CU       -   u ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature isc-miR-279

Accession MIMAT0012694
Description Ixodes scapularis isc-miR-279 mature miRNA
Sequence 52 - UGACUAGAUCCACACUCAUCCA - 73
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68