Stem-loop sequence bmo-mir-2733e-2

Accession

MI0012303 (change log)

Description

Bombyx mori miR-2733e-2 stem-loop

Gene family

MIPF0000766; mir-2733

Literature search

2 open access papers mention bmo-mir-2733e-2
(5 sentences)

Stem-loop

   uuugcuggacugucuauaaugucuuucaac            -   u    aa    uuc 
5'                               aauagcuauuac uuc ccag  gaca   a
                                 |||||||||||| ||| ||||  ||||   c
3'                               uuaucgauaaug aag gguc  cugu   a
   ---------------------uuaaaaccu            u   -    -a    cuu 

Deep sequencing

21 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581684.1: 342566-342664 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2733e-2

• bmo-mir-2733g: NW_004581684.1: 347847-347958 [-]
• bmo-mir-2733a-1: NW_004581684.1: 347677-347760 [-]
• bmo-mir-2851-1: NW_004581684.1: 347670-347768 [+]
• bmo-mir-2733b-2: NW_004581684.1: 347220-347348 [-]
• bmo-mir-2733h: NW_004581684.1: 347062-347142 [-]
• bmo-mir-2733b-1: NW_004581684.1: 346939-347018 [-]
• bmo-mir-2733a-3: NW_004581684.1: 346598-346745 [-]
• bmo-mir-2851-2: NW_004581684.1: 346562-346660 [+]
• bmo-mir-2733a-2: NW_004581684.1: 346489-346605 [-]
• bmo-mir-2733f: NW_004581684.1: 346080-346197 [-]
• bmo-mir-2733i: NW_004581684.1: 344891-344998 [-]
• bmo-mir-2733e-1: NW_004581684.1: 342896-342993 [-]
• bmo-mir-2733e-2: NW_004581684.1: 342566-342664 [-]

Database links

• miRBase Tracker:MI0012303

Mature sequence bmo-miR-2733e

• Accession: MIMAT0013617
• Sequence: 68 - ucacugggaauguaauagcuau - 89
• Deep sequencing: 63 reads, 2 experiments
• Evidence: experimental; Illumina [2]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
2. PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).