miRBase entry: mdo-mir-146b

Stem-loop mdo-mir-146b


Accession
MI0012503
Description
Monodelphis domestica mdo-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146


Sequence

124254 reads, 2208 reads per million, 5 experiments
cuggcucUGAGAACUGAAUUCCAUAGGCUgugagcucaugcaaaugcCCUAGGAAGUCAGUUCUGGAg
....((((.((((((((.((((.((((.(((..((....))..))).)))))))).))))))))))))

Structure
cugg    G        A    A    C   ga  u 
    cucU AGAACUGA UUCC UAGG Ugu  gc c
    |||| |||||||| |||| |||| |||  ||  
    gAGG UCUUGACU AAGG AUCC gua  cg a
----    -        G    -    c   aa  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr1: 109630336-109630403 [-]

Database links

Mature mdo-miR-146b-5p

Accession MIMAT0012747
Description Monodelphis domestica mdo-miR-146b-5p mature miRNA
Sequence 8 - UGAGAACUGAAUUCCAUAGGCU - 29
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mdo-miR-146b-3p

Accession MIMAT0026939
Description Monodelphis domestica mdo-miR-146b-3p mature miRNA
Sequence 48 - CCUAGGAAGUCAGUUCUGGA - 67
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45