miRBase entry: mdo-mir-33

Stem-loop mdo-mir-33


Accession
MI0012511
Description
Monodelphis domestica mdo-mir-33 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

1100 reads, 24 reads per million, 5 experiments
gGUGCAUUGUAGUUGCAUUGCAcgucguguccgggccgugcAAUGUUUCCACAGUGCAUCCcagaggc
((((((((((.(..((((((((((((.......)).))))))))))..).))))))))))........

Structure
--------          A UU          -  gu 
        gGUGCAUUGU G  GCAUUGCAcg uc  g
        |||||||||| |  |||||||||| ||  u
        CUACGUGACA C  UGUAAcgugc gg  c
cggagacC          C UU          c  gc 


Annotation confidence High
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Genome context
NW_001583721.1: 291985-292052 [+]

Database links

Mature mdo-miR-33-5p

Accession MIMAT0012754
Description Monodelphis domestica mdo-miR-33-5p mature miRNA
Sequence 2 - GUGCAUUGUAGUUGCAUUGCA - 22
Evidence experimental
Illumina [2]

Mature mdo-miR-33-3p

Accession MIMAT0026944
Description Monodelphis domestica mdo-miR-33-3p mature miRNA
Sequence 42 - AAUGUUUCCACAGUGCAUCC - 61
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45