Stem-loop mdo-mir-875

Accession

MI0012523

Description

Monodelphis domestica mdo-mir-875 precursor miRNA

Gene family

MIPF0000424; mir-875

Sequence

55 reads, 12 reads per million, 2 experiments

ucugugguacaAUACCUCAGUCUUAUCAGGUGuuaauuaaaaucaccUGGAAAUGCUGAGGUUGCGUuucacuga
((.((((.((...((((((((.((.(((((((...........))))))).)).))))))))...)).)))).))

Structure

  u    u  aAU        C  A       uuaa 
uc gugg ac   ACCUCAGU UU UCAGGUG    u
|| |||| ||   |||||||| || |||||||    u
ag cacu UG   UGGAGUCG AA GGUccac    a
  u    u  CGU        U  A       uaaa 

Annotation confidence Not enough data

Genome context

chr3: 364601417-364601491 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-875

Mature mdo-miR-875-5p

• Accession: MIMAT0012766
• Description: Monodelphis domestica mdo-miR-875-5p mature miRNA
• Sequence: 12 - AUACCUCAGUCUUAUCAGGUG - 32
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-875-3p

• Accession: MIMAT0026949
• Description: Monodelphis domestica mdo-miR-875-3p mature miRNA
• Sequence: 48 - UGGAAAUGCUGAGGUUGCGU - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45